Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNYKAIGKIGEGTFSEVMKMQSLRDGNYYACKQMKQRFESIEQV--NNLREIQALRRLNPHPNILMLHEVVFDRKSGSLALICELMDMNIYEL-----IRGRRYPLSEKKIMHYMYQLCKSLDHIHRNGIFHRDVKPENILIKQD-VLKLGDFGSCRSV-YSKQPYTEYISTRWYRAPECLLTDGFYTYKMDLWSAGCVFYEIASLQPLFPGVNELDQISKIHDVIGTPAQKILTKFKQSRAMNFDFPFKKGSGIPLLTTNLSPQCLSLLHAMVAYDPDERIAAHQALQHPYFQEQRKTEKRALGSHRKAGFPEHPVAPEPLSNSCQISKEGRKQKQSLKQEEDRPKRRGPAYVMELPKLKLSGVVRLSSYSSPTLQSVLGSGTNGRVPVLRPLKCIPASKKTDPQKDLKPAPQQCRLPTIVRKGGR |
| 3RM6 Chain:A ((9-299)) | MENFQKVEKIGEGT-GVVYKARNKLTGEVVALKKIR----T-EGVPSTAIREISLLKELN-HPNIVKLLDVI--HTENKLYLVFEFLHQDLKKFMDASALTGIPLPL----IKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL-------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3RM6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -165360 for 2116 contacts (-78.1/contact) +
2D Compatibility (PS) -28650 + (NN) -7859 + (LL) 6212
1D Compatibility (HY) -28000 + (ID) 5150
Total energy: -228807.0 ( -108.13 by residue)
QMean score : 0.390
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