Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSISSPRINVMLDSVRSASKQLMRDFNEL-QIS-NVKSADFINKTYSRSKQTIYNCLHDYKQDYGFIFEDDIDQEAKEKDYTWFIMPIEGRENFSSRMVYFAVSVCLVHKNKVVAAVVNTPALRETFWAEEKKGAFLEDFRSRHIKMRMKSHE---GSLIDVS------GNLLNKLLPGNSNIRSVGSTVLGFTYLAAGRYSGIVYSGVNKYKALLGRLLLQESAGRLTEDNGFIIAGDVKLT
2P3N Chain:A ((3-227))
------RLDFSIKLLRKVGHLLMIHWGRVDNVEKKTGFKDIVTEIDREAQRMIVDEIRKFFPDENIMAEEGIFE---KGDRLWIIDPIDGTINFVHGLPNFSISLAYVENGEVKLGVVHAPALNETLYAEEGSGAFFNGERIR-----VSENASLEECVGSTGSYVDFTGKFIERMEKRTRRIRILGSAALNAAYVGAGRVDFFVTWRINPWDIAAGLIIVKEAGGMVTDFSGKEANAFSKNF
General information:
TITO was launched using:
RESULT:
Template:
2P3N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128860 for 1825 contacts (-70.6/contact) +
2D Compatibility (PS) -22845 + (NN) -5226 + (LL) 1120
1D Compatibility (HY) -12800 + (ID) 2650
Total energy: -171261.0 ( -93.84 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_2P3N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P3N-query.scw
PDB file :
Tito_Scwrl_2P3N.pdb
: