Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSLINPKVSAMFFDQIVTATDHNIAWEKIQNLLYNLYGEATYNSWLSSLKFVSSSNGEVLLSVPTRFIKEWITVHYMEKILLLWQNEDKSICSIDIQVTEEKNSSSSIISKNKEESVNNLGSPLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPIPGSNPLFLYGGVGLGKTHLMHAIAWHIVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQEEFFHTFNALIDQ---------NKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNMYVPQDVLEFLARNIRSNIRELEGALNKV-AHTSLIG-RSMTVESASETLMDLLRSNHRSITIAEIQKKIAEFFNIKVTDMHSNRRLRSLVRPRQIAMYFAK-KFTHKSLPDIGRSFGGRDHATVIHAVKQIENFIKTDSEFADEINQLRKMFK |
| 3PFI Chain:A ((27-301)) | --------------------------------------------------------------------------------------------------------------------------------NFDGYIGQESIKKNLNVFIAAAKK--RNECLDHILFSGPAGLGKTTLANIISYEMSA------NIKTTAAPMIEK-------SGDLAAILTNLSEGDILFIDEIHRLSPA--IEEVLYPAMEDYRL-AQTIKIDLPKFTLIGATTRA----GMLSNPLRDRFGM--QFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSL---------------------GVNELGFDA--------MDLRYLELLTAAKQKPIGLASIAAALS-EDENTIEDVIEPYLLANGYIERTAKGRIASAKSYS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PFI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -115753 for 1918 contacts (-60.4/contact) +
2D Compatibility (PS) -27120 + (NN) -7233 + (LL) 12840
1D Compatibility (HY) -6400 + (ID) 2150
Total energy: -145816.0 ( -76.03 by residue)
QMean score : 0.476
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