Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDIEN---NLQDLKRKFNYIERKLENPTNLSQKEFINLSKEYSELRPIIKIINEYDT--------------LKKEILDLEEIIKDENSE---YDIKELAKEEFFEKQKVLLPQVKAKLK-----LALLPKDEDDSRNAI------LEIRAGT-------------------GG--------------EEAALFAAMLFRMYQKYAER---------------------------------RNWKFEPISISSTGIGGYKEASALINGTEVFARLKFES------GVHRVQR------VPETESSGRLHTSAATVAILPEVEEVDFKIEEKDLRIDVYRSSGPGGQSVNTTDSAVRVTHLPTEMVVIQQDEKSQHKNKAKALKVLRARLYEIERQKKEIER-----------STMRKSQIGSGDRSERIRTYNFPQSRITDHRINLTSHQLEQIIKEGELDEFIEVLISRNEAE---RLAGES- |
1CB7 Chain:B ((1-483)) | MELKNKKWTDEEFHKQREEVLQQWPTGKEVDLQEAVDYLKKIPAEKNFAEKLVLAKKKGITMAQPRAGVALLDEHIELLRYLQDEGGADFLPSTIDAYTRQNRYDECENGIKESEKAGRSLLNGFPGVNFGVKGCRKVLEAVNLPLQARHGTPDSRLLAEIIHAGGWTSNEGGGISYNVPYAKNVTIEKSLLDWQYCDRLVGFYEEQGVHINREPFGPLTGTLVPPSMSNAVGITEALLAAEQGVKNITVGYGECGNMIQDIAALRCLEEQTNEYLKAYGYNDVFVTTVFHQWMGGFPQDESKAFGVIVTATTIAALAGATKVIVKTPHEAIGIPTKEANAAGIKATKMALNMLEGQRMPMSKELETEMAVIKAETKCILDKMFELGKGDLAIGTVKAFETGVMDIPFGPSKYNAGKMMPVRDNLGCVRYLEFGNVPFTEEIKNYNRERLQERAKFEGRDVSFQMVIDDIFAVGKGRLIGRPE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CB7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 96743 for 2509 contacts (38.6/contact) +
2D Compatibility (PS) -38016 + (NN) -9750 + (LL) 0
1D Compatibility (HY) -6800 + (ID) 2500
Total energy: 39677.0 ( 15.81 by residue)
QMean score : 0.285
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