Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMLDKENPIIKEFEEAGAILHGHFVLSSGLHSDTYTQCAKIFENPSRAMKVCELLANKIKKELNSSIDLILSPAIGGIIVGYEIGRQLRMKTMFCER--V-NGKFELRRGFEIKRGEKILLVEDVITTGKSSLEAVKCAEDMGGKVVAEASLIKRNSE----TK-LPFSIISLLELS-IKNYSEAELPEELKKLPIIKPGSREYLSNCSK
2YZK Chain:A ((1-176))
-------MLAKVLKKRGAVLRGDFVLSSGRRSSVYIDMRRLLGDESSYSVALDLLLEVGGQD-LARSSAVIGVATGGLPWAAMLALRLSKPLGYVRPERKGHGTLSQVEG--DPPKGRVVVVDDVATTGTSIAKSIEVLRSNGYTVGTALVLVDRGEGAGELLARMGVRLVSVATLKTILEKLGWGG-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2YZK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76465 for 1330 contacts (-57.5/contact) +
2D Compatibility (PS) -17997 + (NN) -2383 + (LL) 2124
1D Compatibility (HY) -7600 + (ID) 1800
Total energy: -104121.0 ( -78.29 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_2YZK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YZK-query.scw
PDB file :
Tito_Scwrl_2YZK.pdb
: