Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNLESLPKHLAIIMDGNSRWANSQGRVKIDGYRKGSEVAYDIAKHCIALAIPYLTLYAFSMENWLRPKEETDCLFDL---FYSILTDRDKVNFFHNYNIKLNFVGNLSLLPGKILNQIKESEEMTRKNDGLLLTVAVSYGAKQEIIHAVRNITRKNIDC------VSEDEFEKFLYTKDLPK----LDLLIRTGGEKRLSNFLLWQAAYAELYFCDTLWPDFSCQDLSKALEDYTKREKRYGR
4Q9M Chain:B ((12-239))
-----QVPAHIGIIMDGNGRWAKKRMQPRVFGHKAGMEALQTVTKAANKLGVKVITVYAFSTENWTRPDQEVKFIMNLPVEFYD-----NYVPELHANNVKIQMIGETDRLPKQTFEALTKAEELTKNNTGLILNFALNYGGRAEITQALKLISQDVLDAKINPGDITEELIGNYLFTQHLPKDLRDPDLIIRTSGELRLSNFLPWQGAYSELYFTDTLWPDFDEAALQEAILAYNRR------
General information:
TITO was launched using:
RESULT:
Template:
4Q9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -142898 for 1689 contacts (-84.6/contact) +
2D Compatibility (PS) -22579 + (NN) -481 + (LL) 1328
1D Compatibility (HY) -18400 + (ID) 4500
Total energy: -187530.0 ( -111.03 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_4Q9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Q9M-query.scw
PDB file :
Tito_Scwrl_4Q9M.pdb
: