Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKYDDFIVGETFKTKSLHITEEEIIQFAT-TFDPQYMHIDKEKAEQSRFKGIIASGMHTLSISFKLWVEEGKYGEEVVAGTQMNNVKFIKPVYPGNTLYVIAEITNKKSIKKENGLVTVSLSTYNENEEIVFKGEVTALINNS
4W78 Chain:B ((1-126))
----MTVVGAVLPELKLYGDPTFIVSTALATRDFQDVHHDRDKAVAQGSKDIFVNILTDTGLVQRYVTDWAGPS----ALIKSIGLRLGVPWYAYDTVTFSGEVTAVN-----DGLITVKVVGRNTLGDHV-TATVELSM---
General information:
TITO was launched using:
RESULT:
Template:
4W78.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51904 for 922 contacts (-56.3/contact) +
2D Compatibility (PS) -13742 + (NN) -5188 + (LL) 1232
1D Compatibility (HY) -3600 + (ID) 1350
Total energy: -74552.0 ( -80.86 by residue)
QMean score : 0.413
(partial model without unconserved sides chains):
PDB file :
Tito_4W78.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4W78-query.scw
PDB file :
Tito_Scwrl_4W78.pdb
: