Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYKIDDKQDQRLVNDTLNQIDIPEGYILHSDQGSVYTSYAYYQLCEEKGIIRSMSRKGTPADNAPIESFHSSLKSETLYINNQLNSSNHIVIDIVEKYIKNYNNNQIQQKLGYLSPVKYRELIA
4BDY Chain:B ((174-231))
---------------NVLTSIAIPK--VIHSDQGAAFTSSTFAEWAKERGIHLEFSTPYHPQSSGKVERKNSDIK--------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4BDY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 787 for 287 contacts (2.7/contact) +
2D Compatibility (PS) -6096 + (NN) -2049 + (LL) 4688
1D Compatibility (HY) -2400 + (ID) 950
Total energy: -6020.0 ( -20.98 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_4BDY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BDY-query.scw
PDB file :
Tito_Scwrl_4BDY.pdb
: