Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSTPHIKPMNDVEIAETVLLPGDPLRAKFIAETYLDDVEQFNTVRNMFGFTGTYKGKKVSVMGSGMGMPSIGIYSYELIHTFGCKKLIRVGSCGAMQENIDLYDVIIAQGASTDSNYVQQYQLPGHFAPIASYQLLEKAVETARDKGVRHHVGNVLSSDIFYNADTTASERWMRMGILGVEMESAALYMNAIYAGVEALGVFTVSDHLIHET--STTPEERERAFTDMIEIALSLV
3U40 Chain:D ((11-240))
---TPH-NGAKYGEIAETVLMAGDPLRVKLLADTYLTDVVQYNSVRGAVGYTGYYKGVKLSVQAHGMGMPSIGIYAYELFNFYGVKRIIRIGSAGAFDESLKLGDIVIGMGACYDSNFERQYDIPGKYSCIADFQLCREAVDAAEKLGYRYKVGNIYSANYFYD-DGDHSGAWKKMGVLAVEMEAAALYMIAARARKQALCMLTISD-LCYGSGEKMTAEERRTKFTQMMEVALSL-
General information:
TITO was launched using:
RESULT:
Template:
3U40.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172071 for 1965 contacts (-87.6/contact) +
2D Compatibility (PS) -24401 + (NN) -5433 + (LL) 828
1D Compatibility (HY) -24800 + (ID) 5950
Total energy: -231827.0 ( -117.98 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_3U40.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U40-query.scw
PDB file :
Tito_Scwrl_3U40.pdb
: