Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFIVIKIGGSTLSDMH--PSIINNIKHLRSNNIYPIIVHGGGPFINEALSNQQIEPHFVNGLRVTDKATMTITKHTLIADVNTALVAQFNQHQCSAIGLCGLDAQLFEITSF--DQQYGYVGVPTALNKDALQYLCT-KFVPIINSIGFNNHDGEFYNINADTLAYFIASSLKAP-IYVLSNIAGVLIND----VVIPQLPLVDIHQYIEHGDIYGGMIPKVLDAKNAIENGCPKVIIASGNKPNIIESIYN-NDFVGTTILNS
2RD5 Chain:A ((36-298))
GKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADD-SGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG-
General information:
TITO was launched using:
RESULT:
Template:
2RD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -230440 for 2146 contacts (-107.4/contact) +
2D Compatibility (PS) -27372 + (NN) -9631 + (LL) 16
1D Compatibility (HY) -18000 + (ID) 4250
Total energy: -289677.0 ( -134.98 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_2RD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RD5-query.scw
PDB file :
Tito_Scwrl_2RD5.pdb
: