Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKRMRDDIKMVFEQDPAARSTLEVITTYAGLHAVWSHLIAHKLYNQ-KKYVAARAISQISRFFTGIEIHPGAKIGKRLFIDHGMGVVIGETCTIGDNVTIYQGVTLGGTGKERGKRHPDIGDNVLIAAGAKVLGNIKINSNVNIGANSVVLQSVPSYSTVVGIPGHIVKQDGVRVGKTFDHRHLPDPIYEQIKHLERQLEKTRNGEIQDDYII
3GVD Chain:J ((80-247))
MIVSAARDILAVRLRDPAVDKYSTPLLYLKGFHALQAYRIGHWLWAQDRKALAIYLQNQVSVAF-GVDIHPAATIGCGIMLDHATGIVIGETAVVENDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQSVPAHTTAAGVPARIV---------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3GVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135913 for 1375 contacts (-98.8/contact) +
2D Compatibility (PS) -18311 + (NN) -7922 + (LL) 2832
1D Compatibility (HY) -11600 + (ID) 3800
Total energy: -174714.0 ( -127.06 by residue)
QMean score : 0.602
(partial model without unconserved sides chains):
PDB file :
Tito_3GVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GVD-query.scw
PDB file :
Tito_Scwrl_3GVD.pdb
: