Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASTLEIKDLHVSIED-KEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEV-DERAKAGLFLAMQYPS-EITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMR-GENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE |
| 3GFO Chain:A ((5-233)) | -DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNG--ILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL-----PEDEIRKRVDNALKRTGIEH--LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVP-LYCDNVFVMKEGRVILQGNPKEVFA----------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3GFO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -78387 for 1802 contacts (-43.5/contact) +
2D Compatibility (PS) -24179 + (NN) -6341 + (LL) 2008
1D Compatibility (HY) -10400 + (ID) 2850
Total energy: -120149.0 ( -66.68 by residue)
QMean score : 0.406
|
|
|