Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPVFELKNVNYYYDHKKVLENINIKINKGEFLAIVGPNGAGKSTLLKLILGLLPLQSGEIFVEGIDFKNKKTSIKLSYVSQKANAFNSGFP-ASVKEVVLSGLTKTKRLFQTFNSKDNEKVIKVLERLNISDLIHKNIAELSGGQQQRVMIARALISEPAVLVLDEPTNGIDAKHVSEFYNTLDQL-KQEGITIILVTHDI--------GVVADTATEVACLNKHLH-FHGTTDEFKSLDEVEISKIYGHPVRFVDHQHNRECCN
4KI0 Chain:A ((5-229))
-----QLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYAL---YPHLSVAENMSFGL----KLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF-----------------------------
General information:
TITO was launched using:
RESULT:
Template:
4KI0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134408 for 1608 contacts (-83.6/contact) +
2D Compatibility (PS) -22956 + (NN) -7086 + (LL) 2104
1D Compatibility (HY) -14400 + (ID) 3900
Total energy: -180646.0 ( -112.34 by residue)
QMean score : 0.529
(partial model without unconserved sides chains):
PDB file :
Tito_4KI0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KI0-query.scw
PDB file :
Tito_Scwrl_4KI0.pdb
: