Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MALLKNFFIGLSNNSFLNNAAKKVGPRLGANKVVAGNTIPELINTIEYLNDKNIAVTVDNLGEFVGTVEESNHAKEQILTIMDALHQHGVKAHMSVKLSQLGAEFDLELAYQNLREILLKANTYNNMHINIDTEKYASLQQIVQVLDRLKGEFRNVGTVIQAYLYDSHKLVDKYQD-----LRLRLVKGAYKEN--ESIAFQSKEDV--DANYIKIIEQRLLNARNFTSIATHDHRIINHVKQFMKENHIEKDRMEFQMLYGFRSELAEEIANEGYNFTIYVPYGDDWFAY---------FMRRLA-----------ERPQNLS-----LAVKEFVKPAGLKRVGIIAALGATVMLGLSTIKKLCRK |
| 4NTC Chain:A ((2-326)) | ----------MSIGKLLSNGA------LLVDVLIIGAGPAGLSTATGLARQLHTAVVFDS--------GVYRNAKTQ--------HMHNVLGWDHRNPAELRAAGRADLTTRY--------STIQFQNSTIEAIRQVETNQLFEARDNEGHSWYGRKVVLATGVRDIPLDIEGYSECWANGIYHCLFCDGYEERGQETVGVLALGPIANPARALHLARMALRLSESVTIYTNGNEQLAKEIQQAAEESPVGASGLKFEARPIRRFEKGDVAKTVIVHLGESESKTEGFLVYNPQTEVNGPFAKQLALNMTEGGDILTTPPFYETSVPGVFAVGDCATP--LKAVTPAVSMGSLAAGGLVAQLQAQAL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NTC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -45578 for 2329 contacts (-19.6/contact) +
2D Compatibility (PS) -29636 + (NN) 5495 + (LL) 3800
1D Compatibility (HY) -1600 + (ID) 2600
Total energy: -70119.0 ( -30.11 by residue)
QMean score : 0.142
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