Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDEAKF--VLLQLYSIYLGRI--DEGMSKHSASYFGSDESSFNAFFLGFNFEDYIDAVLELKHRDFVIASAE---------------DGGFLEMAL------SREGIAYSESESKKDYKTLMGLIRDLKKLII
1TQZ Chain:A ((1-133))
MAAELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGIAVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQE-
General information:
TITO was launched using:
RESULT:
Template:
1TQZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41156 for 615 contacts (-66.9/contact) +
2D Compatibility (PS) -10873 + (NN) 2257 + (LL) 204
1D Compatibility (HY) -800 + (ID) 950
Total energy: -51318.0 ( -83.44 by residue)
QMean score : 0.178
(partial model without unconserved sides chains):
PDB file :
Tito_1TQZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TQZ-query.scw
PDB file :
Tito_Scwrl_1TQZ.pdb
: