Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAYNPKILQKPKEGEEITIKDGK-LHV--PNYPIIPFIEGDGIGSDITPAMIKVVDSAVQKAYKGEKKIAWYEVF-VGEKCYQKFKDHKELSPEEQWLLPDTIEAINHYKVSIKGPLTTPIGEGFRSLNVALRQKMDLYVCLRPVRWYGS-PSPVKEPQKVDMVIFRENSEDIYAGIEWQEGSAEAKKLIHFLQNELKVEKIRFPESSGVGIKPISKEGTERLVRKAIEYAIDNDKPSVTFVHKGNIMKYTEGAFMKWGYALAQKEFNAQVIDKGPWCSLKNPKTGKEIIIKDMIADAFLQQILLRPSEYSVIATMNLNGDYISDALAAMVGGIGIAPGANLNDTVGMFEATHGTAPKYAGLDKVNPGSIILSAEMMLRHMGWVEAADLIVSAMEKAIKSKKV-TYDFARLMDGAKEVKCSEFASVMIENM |
2D1C Chain:A ((4-355)) | ----------------ITTETGKKMHVLEDGRKLITVIPGDGIGPECVEATLKVLEAA--------KAPLAYEVREAGASVFRR--GIASGVPQE------TIESIRKTRVVLKGPLETPVGYGEKSANVTLRKLFETYANVRPVREFPNVPTPYAG-RGIDLVVVRENVEDLYAGIEHMQTPSVAQTL-----------------------KLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVAQEYPDIEAVH--------------------IIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFATADLIENALLYTLEEGRVLTGDVVGYDRGA---KTTEYTEAIIQNL |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2D1C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -167530 for 3047 contacts (-55.0/contact) +
2D Compatibility (PS) -38179 + (NN) -19587 + (LL) 4716
1D Compatibility (HY) -22400 + (ID) 6950
Total energy: -249930.0 ( -82.02 by residue)
QMean score : 0.501
|
|
|