Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVH-----SKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL
4F2P Chain:A ((18-245))
--KIGIIGAMEEEVTLLRDKID-NRQTITLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLASTLKVGDIVVSDETRYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAESCIRELNLNAVRGLIVSGDAFINGSVGLAKIRHNFP----DAVAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSTLMVETLVQKL
General information:
TITO was launched using:
RESULT:
Template:
4F2P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141699 for 1999 contacts (-70.9/contact) +
2D Compatibility (PS) -23525 + (NN) -4538 + (LL) 920
1D Compatibility (HY) -15600 + (ID) 4000
Total energy: -188442.0 ( -94.27 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_4F2P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F2P-query.scw
PDB file :
Tito_Scwrl_4F2P.pdb
: