Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKLEVGQLAPDFR---LKNSDGVEISLKDLLHKKVVLYFYPKDNTPGCTLEAKDFSALFSEFEKKNAVVVGVSPDNSQSHQKFISQCS-------LNVILLCDEDKKVANLYKAYGKRMLYGKEHLGI-IRSTFIINTQGVLEKCFYNVKAKGHAQKVLESL
4MH3 Chain:C ((29-165))
-----VTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQIS---RDYGVLL----EGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRL
General information:
TITO was launched using:
RESULT:
Template:
4MH3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62164 for 878 contacts (-70.8/contact) +
2D Compatibility (PS) -13892 + (NN) -6073 + (LL) 1004
1D Compatibility (HY) -9600 + (ID) 2500
Total energy: -93225.0 ( -106.18 by residue)
QMean score : 0.636
(partial model without unconserved sides chains):
PDB file :
Tito_4MH3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MH3-query.scw
PDB file :
Tito_Scwrl_4MH3.pdb
: