Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFD---RVFVFPDFLGL-LPNAFL---HFTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKG---------FRAVKEFLSEQLENIDLNYSNLIVAYEPIWAIGTKKSASLEDIYLTHGFLKQILNQK--------TPLLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL
1CI1 Chain:B ((8-242))
---IAAANWKCN----GSESLLVPLIETLNAATFDHDVQCVVAPTFLHIPMTKARLTNPKFQIAAQNAITRS-GAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLSKEA------WSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGGASLKPEFVEIIEATK
General information:
TITO was launched using:
RESULT:
Template:
1CI1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122820 for 1640 contacts (-74.9/contact) +
2D Compatibility (PS) -22792 + (NN) -9270 + (LL) 1020
1D Compatibility (HY) -20800 + (ID) 4150
Total energy: -178812.0 ( -109.03 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_1CI1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CI1-query.scw
PDB file :
Tito_Scwrl_1CI1.pdb
: