Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFK-QNV----LPENEEGVFVIRSIKADFFTPASLGQVLEIRTQIKELRKVFVVLFQEIYCIQNASLEPMKPFKVFASEIKFGFVNRSTYSPIAIPKLFKELLSAV
3CK1 Chain:A ((9-137))
-TVLVRFKHCDAAGIVFYPRYFEMLNDFIEDWFAQALDWPFDAMHGAGQAGVPTADLHCRFVAPSRLGETLTRELRVVKLGQSSFTVQVRFMGP--------DSGLRLEVTQRLVCVDTDKIAPRPLPDPVRQAMATY
General information:
TITO was launched using:
RESULT:
Template:
3CK1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97337 for 850 contacts (-114.5/contact) +
2D Compatibility (PS) -13166 + (NN) -946 + (LL) 712
1D Compatibility (HY) -6400 + (ID) 750
Total energy: -117887.0 ( -138.69 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_3CK1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CK1-query.scw
PDB file :
Tito_Scwrl_3CK1.pdb
: