Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKELGFLGHYHPILLPLES---RIKNEFLHLGLSGANVTLPFKERAFQICDKIKGIALECASVNTLVLENDELVGYNTDALGFYLSLKHQNYQNDQNALILGAGGSAKALACGLQKQGLKVSVLNRSA-RGLDFFQRLGCDCF-MEPPKSAFDLIINATSASLHNE--LPLNKEVLKGYFKESKLAYDLAYGFL-TPFLSLAKELKIPFQDGKDMLIYQASLSFEKFSDSQIPYSKAFEVMRSVF
1WXD Chain:B ((4-244))
-----FAVLGHPVAHSLSPAMHAFAL----ESLGLEGSYEAWDTPLEALPGRLKE--VRRAFRGVNLTLPLKEAALAHLDWVSPEAQRIGAVNTVLQVEGRLFGFNTDAPGFLEALKAGGIPLKGPALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKAREA-RLLVNATRVGLEDPSASPLPAEL----FPEEGAAVDLVYRPLWTRFLREAKAKGLKVQTGLPMLAWQGALAFRLWTGLLPDPSGMEEAARRAL
General information:
TITO was launched using:
RESULT:
Template:
1WXD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154459 for 2032 contacts (-76.0/contact) +
2D Compatibility (PS) -24678 + (NN) -7143 + (LL) 1492
1D Compatibility (HY) -19200 + (ID) 4450
Total energy: -208438.0 ( -102.58 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_1WXD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WXD-query.scw
PDB file :
Tito_Scwrl_1WXD.pdb
: