Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIKACYQNAQALLEGHFLLSSGFHSNYYLQSAKVLEDPKLAEQLALELAKQIQEAHLNIECVCSPAIGGILAGYELARALGVRFIFTERV---DNT------------MTLR-----RGFEVKKNEKILVCEDIITTGKSAMECAKVLEEKGAQIVAFGALANRGICKRAHSHLKAQEGACLPS-HLPLFALEDFVFDMHKPSSCPLCATSVAIKPGSRGN
1Y0B Chain:A ((5-187))
EALKRKIEEEGVV-LSDQVLKVDSFLNH-------QIDPLLMQRIGDEFASRFAK--DGITKIVTIESSGIAPAVMTGLKLGVPVVFARKHKSLTLTDNLLTASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLANGQAAHGLVSIVKQAGASIAGIGIVIEKSFQ---------PGRDELVKLGYRVESLARIQSLEEGKVSFVQE-------------
General information:
TITO was launched using:
RESULT:
Template:
1Y0B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97368 for 1249 contacts (-78.0/contact) +
2D Compatibility (PS) -17353 + (NN) -1464 + (LL) 2536
1D Compatibility (HY) -5600 + (ID) 1350
Total energy: -120599.0 ( -96.56 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_1Y0B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y0B-query.scw
PDB file :
Tito_Scwrl_1Y0B.pdb
: