Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------------------------------MGFLFEKSLMGFCAHSIKIIKVTGLILSFLAAFLVAEDTHEPEEIKAKVAYVKIPQLEDLENTPVYIGQTIGVTYDLLLFDAEFLEAKIKDGWDKTQIELLNKMPKWKKVEKE-----LFRATY----------YYKIKGIRASIPSLEVSAF-------------------SNKDKYIDHSIAPKVALQVTDLSKNPRYANVMAKDLQVVQYKTKDYDDKNNILVMELAFKEANWEDFHVKEAIKQGFDNASLNQIKAKEGSVFYYCVLPKTLQNLSFDYFSLSNRQFKTLSFSAIPTQDTTGIQSDLIPKNNFLVFSNVALLALCVFFLALFFIFGRKLIFLGLGILCLGFVLYNLLF--TQKSALLLAHKKIRILPTQNSTI--------LGLSRDEMPIKIL-----GSHDDYYKILTPHEQIGWVKKDEVK--------------- |
| 1E15 Chain:A ((3-498)) | TRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQ----------QLG----GVMFWHLGQDNRNGDLLAALDRYFNAADYDDSQLDMGTGLRYTGVGPGNLPIMTAPAYVPGTTYAQGALVSYQGYVWQTKWGYITSAPGSDSAWLKVGRV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1E15.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -71277 for 2665 contacts (-26.7/contact) +
2D Compatibility (PS) -38013 + (NN) -506 + (LL) 1760
1D Compatibility (HY) 2400 + (ID) 1750
Total energy: -107386.0 ( -40.29 by residue)
QMean score : 0.091
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