Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LYQMKNKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTLEDSERNELWIPHYENPVSWPVGGELKPDGEHWTFTAEAINIATTFLKSEGIELTPVKMIIET------------ELIDQSGAKYGLGSSAAATVAVINALMT---------------KFYPEISMLKKFKLAALSHLVVQGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVPTFSVGWTGTPVSTGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSAIKENRRILQELGTKAGV-NIETSLLKELADSAENMGGAGKSSGSGGGDCGIAF---SKTKELAEKLVNEWEKLGIKHLPFHTGR--VQITE------------- |
| 1KVK Chain:A ((1-394)) | --MLSEVLLVSAPGKVILHGEHAVVH-GKVALAVALNLRTFLVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAICRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGVDNSVSTWGGALRYQQGKMSSLK------------------------RLPALQILLTNTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELMDMNQHHLNALGVGHASLDQLCQVTAAHGLHSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGCGFDCWETSIGAPGVSMHSATSIEDPVRQALG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KVK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -117410 for 2748 contacts (-42.7/contact) +
2D Compatibility (PS) -36043 + (NN) -11263 + (LL) 2692
1D Compatibility (HY) -8400 + (ID) 3400
Total energy: -173824.0 ( -63.25 by residue)
QMean score : 0.427
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