Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---LDKKAIFDS-----VSNMEEQIGELYQQLGDLKTN--LGEMLEE------NNRLNLE-NEHLRRRLSLTDEATP-EPKAETEAEHGVMAPNRKEAMQQMI--------ELGEGYDNLV----QLYKEGFHV--------CNVHFG-SPRGNDEDCLFCLSLLNKK
1K45 Chain:A ((1-168))
MLVANINGGFESTPAGVVTDLAEGVEGWDLNVGSSVTNPPVFEVLETSDAPEGNKVLAVTVNGVGNNPWDIEATAFPVNVRPGVTYTYTIWARAEQDGAVVSFTVGNQSFQEYGRLHEQQITTEWQPFTFEFTVSDQETVIRAPIHFGYAANVGNTIYIDGLAIASQP
General information:
TITO was launched using:
RESULT:
Template:
1K45.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18578 for 955 contacts (-19.5/contact) +
2D Compatibility (PS) -12614 + (NN) 10872 + (LL) 0
1D Compatibility (HY) -5200 + (ID) 1250
Total energy: -26770.0 ( -28.03 by residue)
QMean score : -0.045
(partial model without unconserved sides chains):
PDB file :
Tito_1K45.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K45-query.scw
PDB file :
Tito_Scwrl_1K45.pdb
: