Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKVVVKNVTFGEGAPKICVPMVGKTVAALKEEAEMLQTIDLDVVEWRVDFFEDVKDLAKVEAALGEIRAILPETPILFTFRSAKEGGELAVSDEFYFELNETLAGTGKIDLVDVELFNEEADVLRLIETAHKNNVKVVMSNHDFDKTPAKEEIVSRLTRMEALGADLPKIAVMPKSAGDVLTLLDATNTVFEK-ANQPIITMSMAGTGVISRLAGEVFGSAMTFGAAKKASAPGQIDVNELRHVLDLLHKQF
1L9W Chain:C ((1-250))
MKTVTVKNLIIGEGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMILH---
General information:
TITO was launched using:
RESULT:
Template:
1L9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127691 for 2150 contacts (-59.4/contact) +
2D Compatibility (PS) -27192 + (NN) -11627 + (LL) 316
1D Compatibility (HY) -24400 + (ID) 6900
Total energy: -197494.0 ( -91.86 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_1L9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L9W-query.scw
PDB file :
Tito_Scwrl_1L9W.pdb
: