Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVGNNIAKSYP--NKLVLQNVDFEAKSGDMIVLTGENGSGKTTLLDMLASLKKPDSGTLELDNELFT---TNDIRQQIAYLNNELYAKKSTTIEDFMKQHGLLFENIELDKWDRLLAGWRIN--KR-----------LKLGELSTGMLMKVKIGSVLARKAKLYLYDEPFASIDIMARSEVMKAIISETNPDAITIISSHHLEGTEKLYSKLWLIKDNTLQTIE-TETYREETGNALIDFYKEEMNK
3GD7 Chain:A ((20-246))
-MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNAAH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIEAM-LECDQFLVIEENKVRQYDSILELYHYPAD------------
General information:
TITO was launched using:
RESULT:
Template:
3GD7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107711 for 1548 contacts (-69.6/contact) +
2D Compatibility (PS) -22198 + (NN) -4878 + (LL) 1560
1D Compatibility (HY) -11200 + (ID) 1800
Total energy: -146227.0 ( -94.46 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_3GD7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GD7-query.scw
PDB file :
Tito_Scwrl_3GD7.pdb
: