Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQAIDAILGHYSVRKF-EDKDLTEEALTLLIKSAQAASTSSFVQAYSIIGITDKDIREQISAIAGNQPYTVQTGQLFIFVADLARHHAILEEHQVDTAALETSEKWLVSVIDAALAAQNMAIAAESLGLGICFIGGIRNDVEQIAEILDL-PPYTMPLFGLTIGHPV-ANKEKAKPRLPQDLVYHENSYKKMNPETLAEYDKQIKTYYNERTAGKRVEGWSEQIARGLGRPSRLDLKAFLEKQHLNQK
1BKJ Chain:A ((2-240))
-NNTIETILAHRSIRKFTA-VPITDEQRQTIIQAGLAASSSSMLQVVSIVRVTDSEKRNELAQFAGNQAYVESAAEFLVFCIDYQRHATINP-----DVQADFTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELLG-LPENSAVLFGMCLGHPDQ--NPEVKPRLPAHVVVHENQYQELNLDDIQSYDQTMQAYYST---------WSQEVTGKLAGESRPHILPYLNSKGLAKR
General information:
TITO was launched using:
RESULT:
Template:
1BKJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117590 for 1591 contacts (-73.9/contact) +
2D Compatibility (PS) -25064 + (NN) -13459 + (LL) 1168
1D Compatibility (HY) -18400 + (ID) 4150
Total energy: -177495.0 ( -111.56 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_1BKJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BKJ-query.scw
PDB file :
Tito_Scwrl_1BKJ.pdb
: