Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIVESKLAGVKLVKPKVFGDHRGFFMESYNEKAFHEA-GIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQTKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITENVNVLYKVDQLYSPENDAGIAYDDPDLNITWPTD-KLILSDKDTKHPRLKDAENNFVWENK
4HN1 Chain:B ((13-178))
--------------EPVIHSDHRGRSHEWFRGESFRQAFGHDFPVAQVNVAVS-HRGALRGINYTEIPPGQAKYSVCVRGAGLDVVVDVRIGSPTFGRWEIVPMDAERNTAVYLTAGLGRAFLSLTDDATLVFLCSSGYAPAREHSVNPLDPDLGIAWPDDIEPLLSDRDENAPTLATAER-------
General information:
TITO was launched using:
RESULT:
Template:
4HN1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51815 for 1181 contacts (-43.9/contact) +
2D Compatibility (PS) -17698 + (NN) -9399 + (LL) 2300
1D Compatibility (HY) -10000 + (ID) 2850
Total energy: -89462.0 ( -75.75 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_4HN1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HN1-query.scw
PDB file :
Tito_Scwrl_4HN1.pdb
: