Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMEETTKIPQATAKRLPLYHRYLKYLDESGKERVSSAELSEAVKVDSATIRRDFSYFGALGKKGYGYNVSYILDFFSKTLSQDKQTNVALIGVGNLGTALLHYNFMKNNNIKIVAAFDVDPAKVG-SVQQDIPIYHLNDMEEIVRENGVEVVILTVPADEAQVTVDRLIEADVKGILNFTPARISVPKQVRVHHIDLTTELQTLIYFLENYPAKTE
2VT3 Chain:A ((11-209))
----------ATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALG-----YNVDYLLSFFRKTLDQD---DVILIGVGNLGTAFLHY------NTKISMAFDINESKIGTEVG-GVPVYNLDDLEQHVK--DESVAILTVPAVAAQSITDRLVALGIKGILNFTPARLNVPEHIRIHHIDLAVELQSLVYFLKHYS----
General information:
TITO was launched using:
RESULT:
Template:
2VT3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150778 for 1267 contacts (-119.0/contact) +
2D Compatibility (PS) -19730 + (NN) -5538 + (LL) 1760
1D Compatibility (HY) -22800 + (ID) 6150
Total energy: -203236.0 ( -160.41 by residue)
QMean score : 0.658
(partial model without unconserved sides chains):
PDB file :
Tito_2VT3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VT3-query.scw
PDB file :
Tito_Scwrl_2VT3.pdb
: