Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VKNTIKWIAIGFAGIILLPLLIVFFIYKKAVGKKDYNPEVLENLDKASQEFVKNTSPLSDVDSRYKYMRLATKALPSAKDIEIGDVENKKIDGPAGKIPIRIYTPQEDGPFEIIVYYHGGGFVLGGLQTHDAIARKLVQTTGARVVTVDYRLAPENPFPAAVEDAYAALLWVQNHRTSLR-AKSSD-IIVAGDSVGGNLATVVTQIAKSKGKPNITAQILLYPATDI-FSRDASVLYPSMDEFAEGYVLTKESLDKFFKLYIANASDRKYDPLVAPIRSKDLVGLPKTFIATAEFDPLRDQGEAYAKKLKDAGVEVFAKRFEKVPHGFMTTNSEATDETYELISEFLEEK |
| 3DNM Chain:D ((97-297)) | -----------------------------------------------------------------------------------------------------------------ILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRLAPENPFPAAVDDCVAA------YRALLKTAGSADRIIIAGDSAGGGLTTASMLKAKEDGLPMPAGLVMLSPFVDLTLSRWSNSNLADRDFLAE-----PDTLGEMSELYV-GGEDRK-NPLISPVYA-DLSGLPEMLIHVGSEEALLSDSTTLAERAGAAGVSVELKIWPDMPHVF---------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DNM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -112936 for 1767 contacts (-63.9/contact) +
2D Compatibility (PS) -21333 + (NN) -12729 + (LL) 10516
1D Compatibility (HY) -12000 + (ID) 4000
Total energy: -152482.0 ( -86.29 by residue)
QMean score : 0.592
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