Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNWTIWDKSQKVPYTLLLEADPSEKQIAKYLDKSHVFQLMHDDIVIGIICLFPLNNDQLEIMNIAVSSDYRNQGIGKKLLEKAFDYAIHKHFIKIIVKTGNSSIDQLAFYQKNGFRMQHIIPNYFTENYPNQTITENGIVCLDQIILLKEIKS
3PP9 Chain:A ((76-185))
---------------------------------QIIYIALLHNQIIGFIVLKKNWNNYAYIEDITVDKKYRTLGVGKRLIAQAKQWAKEGNMPGIMLETQNNNVAACKFYEKCGFVIGGFDFLVYKGLNMT--------SDEVAIYWYLHF--
General information:
TITO was launched using:
RESULT:
Template:
3PP9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80218 for 741 contacts (-108.3/contact) +
2D Compatibility (PS) -11886 + (NN) -5025 + (LL) 3044
1D Compatibility (HY) -8400 + (ID) 1250
Total energy: -103735.0 ( -139.99 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_3PP9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PP9-query.scw
PDB file :
Tito_Scwrl_3PP9.pdb
: