Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFVTHSKNGY---YDGLIFHRVIPEFMIQGGD-PDGRGTGGESIWGESFEDE-FSTEAFNLRGALSMANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEVIEAYKQGGTPWLDGRHTVFGHVIEGMDVVDEIANLPTGMQDKPVNDVVIEKINIK
1H0P Chain:A ((21-162))
-----------------------GRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGA-GWLSMANAGADTNGSQFFITTVK---------------------------TPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVII------
General information:
TITO was launched using:
RESULT:
Template:
1H0P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48443 for 1031 contacts (-47.0/contact) +
2D Compatibility (PS) -14652 + (NN) -9275 + (LL) 4228
1D Compatibility (HY) -10400 + (ID) 3850
Total energy: -82392.0 ( -79.91 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_1H0P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H0P-query.scw
PDB file :
Tito_Scwrl_1H0P.pdb
: