Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MPIVNMTDMLKKALAGKYAVGQFNINNLEWTQAILKAAEAEKAPVILGVSEGAAKYMGG---FKTVVKMTEGLVEDLKITVPVAIHLDHG-----------SSFDSCKAAIDAGFSSVMIDGSHHPIDENIAMTKQVVDYAHAKGVSVEAEIGTVGGDEDGVTGGIN--YADPQECLRVVKEANIDALAAALGSVHGPYHGEPVLGFDEMKEISELTGA--PLVLHGGSGIPEHQIKKAIELGHSKINVNTECQIVWTAAVREKLATDDK-VYDPRKVIGPGVDAIIKTVTEKIQEFGSNGKA- |
| 1GVF Chain:A ((2-285)) | SIIS---TKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFK----HIALEEIYALCSAYSTTYN--MPLALHLDHHESLDDIRRKVHA-----------GVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGS----------AFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENP-QGNDPRYYMRVGMDAMKEVVRNKINVCGSANRIS |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GVF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -108655 for 2137 contacts (-50.8/contact) +
2D Compatibility (PS) -28361 + (NN) -14588 + (LL) 1048
1D Compatibility (HY) -21200 + (ID) 5050
Total energy: -176806.0 ( -82.74 by residue)
QMean score : 0.633
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