Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VEIKQIKAKDTQDIRHRVLRPEQPEENAIYPNDDMEGTFHLGAFEKDVLLGVASFYPEKSTVIMNPAQYRIRGVATERRMRLKGLGTALLAEGEAEIWTRGADIIWCNA----------------------------RIVAVGFYEKHGYRKVGKSFVIPGIG-EHYLMKKVNPNKKVDQDN
1N71 Chain:A ((43-178))
-----------------------------------PERIAVAAVDQDELVGFIGAIPQYG-----ITGWELHPLVVESSRRKNQIGTRLVNYLEKEVASRGGITIYLGTDDLDHGTTLSQTDLYEHTFDKVASIQNLREHPYEFYEKLGYKIVGVLPNANGWDKPDIWMAKTIIPR------
General information:
TITO was launched using:
RESULT:
Template:
1N71.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27709 for 702 contacts (-39.5/contact) +
2D Compatibility (PS) -11303 + (NN) -362 + (LL) 3164
1D Compatibility (HY) -5600 + (ID) 1350
Total energy: -43160.0 ( -61.48 by residue)
QMean score : 0.296
(partial model without unconserved sides chains):
PDB file :
Tito_1N71.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N71-query.scw
PDB file :
Tito_Scwrl_1N71.pdb
: