Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------MRNELEDKILAILEQHQVGVLTSVQ--GDYPHARYMTFLHDGLTLYTPSGKELPKTDEVRRNPHVSVLIGYESPGSAFLEINGLASLEEDESIKERIWENISKEW--FRGEDSPSFVVIKIVPEQIRILNSDDDGPDTLD-LIG------
2IAB Chain:A ((3-155))
TTPPARTAKQRIQDTLNRLELDVDAWVSTAGADGGAPYLVPLSYLWDGETFLVATPAASPTGRNLSETGRVRLGIG---PTRDLVLVEGTALPLEPAGLPDGVGDTFAEKTGFDPRRLTTSYLYFRISPRRVQAWREANELSGRELMRDGEWLVTD
General information:
TITO was launched using:
RESULT:
Template:
2IAB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40405 for 977 contacts (-41.4/contact) +
2D Compatibility (PS) -15229 + (NN) -9303 + (LL) 168
1D Compatibility (HY) -2000 + (ID) 1050
Total energy: -67819.0 ( -69.42 by residue)
QMean score : 0.383
(partial model without unconserved sides chains):
PDB file :
Tito_2IAB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IAB-query.scw
PDB file :
Tito_Scwrl_2IAB.pdb
: