Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARIAGVDIPNDKRVVISLTYVYGIGLSTSKKILAAAGISEDIRVKDLTPDQEDAIRREVD-AIKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPVRGQNTKNNARTRKGKAVAIAGKKK
4DUZ Chain:M ((2-119))
-ARIAGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVENTWKLEGELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAG---
General information:
TITO was launched using:
RESULT:
Template:
4DUZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33736 for 735 contacts (-45.9/contact) +
2D Compatibility (PS) -12253 + (NN) -315 + (LL) 400
1D Compatibility (HY) -9200 + (ID) 3450
Total energy: -58554.0 ( -79.67 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_4DUZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DUZ-query.scw
PDB file :
Tito_Scwrl_4DUZ.pdb
: