Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKFGKKLGFLALLMSIVLILGACGKTGLGNSTGNSTKNVTKKSAKNLKLGVSISTTNNPYFVAMKDGIDKYASNKKISIKVADAQDDAARQADDVQNFISQNVDAILINPVDSKAIVTAIKSANNANIPVILMDRGSEG---GKVLTTVASDNVAAGKMAADYAVKKLGKK-AKAFELSGVPGASATVDRGKGFHSVAK--SKLDILSSQSANFDRAKALNTTQNMIQG---HKDVQIIFAQNDEMALGAAQAVKSAGLQ---NVLIVGIDGQPDAHDAIKKGDISATIAQQPAKMGEIAIQAAIDHYKGKKV-EKETISPIYLVTKDNVEKYNW |
| 2VK2 Chain:A ((2-290)) | ---------------------------------------------PLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP-NMAGPAFDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELE |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VK2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -84182 for 2480 contacts (-33.9/contact) +
2D Compatibility (PS) -29890 + (NN) -11921 + (LL) 2500
1D Compatibility (HY) -15200 + (ID) 4650
Total energy: -143343.0 ( -57.80 by residue)
QMean score : 0.559
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