Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDTMILNDNHKIPTLGLGTWM---INNDRVAQVVKDAIELGYRHINTAQAYNNEKGVGVGIK----ESGITRESLFVTTKIAAEHKNYESATKSIDQSLEALGLDCIDLMIIHSP---QPWKEWRETDKHFDQGNL
4XVD Chain:A ((10-133))
------LNDGHFMPVLGFGTYAPPEVPRSKALEVTKLAIEAGFRHIDSAHLYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWSTFHRPELVRPALENSLKKAQLDYVDLYLIHSPMSLKP--ELSPTDENGKVIFD
General information:
TITO was launched using:
RESULT:
Template:
4XVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33478 for 747 contacts (-44.8/contact) +
2D Compatibility (PS) -11633 + (NN) 56 + (LL) 868
1D Compatibility (HY) -9200 + (ID) 2300
Total energy: -55687.0 ( -74.55 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_4XVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4XVD-query.scw
PDB file :
Tito_Scwrl_4XVD.pdb
: