Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIDFLLLKSLHSLLGLTITVCDQNFSVIREYKSEKTISLFYNHYLILSNFSKTQHDFLFHYGSLGELFLVHHIQQYYIIIGPWRSNVIDPLLLKKKLTETQINASEQNYFIDRLSQLPFFSLSQIRELLIVTNYCLTGVVKDKLSEPLHYYTKGWSNSFDLDKIKQFSKQNMSSYKYQYHFENNILKAVKSGSEFLLKETVEQFSN-----SIVPIISGDEL-RSEKNYSIMIYDRLSQATIQAGLDIETAYRARDRFIKENESTISLNEVLKL----------RDTAILFYTQQVHSLKK----HLETPHSQTIVAVIRYLENNLNRFIKTEEIAKECHMSESKLRKLFKQEKHITIQQYFLNLKIEAAKQLLDENK-KVEEVSNLLGFSTSSNFSRTFKKIVGISPLEYKQKPKTI |
| 3GBG Chain:A ((4-273)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------KKSFQTNVYRMSKFDTYIFNNLYINDYKMFWIDSGIAKLIDKNCLVSYEINSSSIILLKKNSIQRFSLTSLSDENINVSVITISDSFIRSLKSYILGNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELE-SRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GBG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -6367 for 1752 contacts (-3.6/contact) +
2D Compatibility (PS) -24951 + (NN) -3653 + (LL) 12308
1D Compatibility (HY) -9200 + (ID) 1350
Total energy: -33213.0 ( -18.96 by residue)
QMean score : 0.380
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