Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQSYSKNANHNMRRPVVKEEIVQYMRQHQKQNNGCLAELEAFAKQE--NIPIIPHETATYFRFLMQTLQPKHILEIGTAIGFSALLMAENA-PEAKITTIDRNEEMIVLAKENFAKYDNHNQITLLEGDAVDVLQT----LDKSYDFVFMDSAKSKYIVFLPQVLKHLDVGGVVVLDDIFQGGDIAKPIDEVRRGQRTIYRGLQRLFDSTLRHPDLTATLV-PLG----DGLLMIRKNAEHIVLED
3DUW Chain:A ((7-222))
------------------WTAVDQYVSDVLIPKDSTLEEVLQVNAAANLPAHDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSN-----DPRVQGIRRFYELIAAEPRVSATALQTVGSKGYDGFIMAVVK--------
General information:
TITO was launched using:
RESULT:
Template:
3DUW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113875 for 1680 contacts (-67.8/contact) +
2D Compatibility (PS) -22706 + (NN) -15591 + (LL) 2452
1D Compatibility (HY) -10400 + (ID) 2200
Total energy: -162320.0 ( -96.62 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_3DUW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DUW-query.scw
PDB file :
Tito_Scwrl_3DUW.pdb
: