Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVEKLVKLQIPAGKATPAPPVGPALGQAGINIMGFTKEFNARTADQAGMIIPVVISVYEDKSFDFITKTPPAAVLLKKAAGVEKGSGEPNKTKVATVTRAQVQEIAETKMPDLNAANLESAMRMIEGTARSMGFTVTD
1MMS Chain:A ((7-139))
-------QIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVV-
General information:
TITO was launched using:
RESULT:
Template:
1MMS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66545 for 963 contacts (-69.1/contact) +
2D Compatibility (PS) -15184 + (NN) -13606 + (LL) 764
1D Compatibility (HY) -14800 + (ID) 4800
Total energy: -114171.0 ( -118.56 by residue)
QMean score : 0.569
(partial model without unconserved sides chains):
PDB file :
Tito_1MMS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MMS-query.scw
PDB file :
Tito_Scwrl_1MMS.pdb
: