Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTQVFQGRSFLAEKDFSREEFEYLIDFSAHLKDLKKRGVPHHYLEGKNIALLFEKTSTRTRAAFTTAAIDLGAHPEYLGANDIQLGKKESTEDTAKVLGRMFDGIEFRGFSQRMVEELAEFSGVPVWNGLTDEWHPTQMLADYLTIKENFGKLEGITLVYCGDGRNNVANSLLVAGTLMGVNVHIFSPKELFPAEEIVKLAEEYAKESGAHVLVTDNVDEAVKGADVFYTDVWVSMGEEDKFKERVELLQPYQVNMELIKKANNDNLIFLHCLPAFHDTNTVYGKDVAEKFGVKEMEVTDEVFRSKYARHFDQAENRMHTIKAVMAATLGNLFIPKV |
| 4NF2 Chain:C ((36-335)) | -------KDLLTLEELTQEEIISLIEFAIYLKKNKQEPL----LQGKILGLIFDKHSTRTRVSFEAGMVQLGGHGMFLNGKEMQMQRGETVSDTAKVLSHYIDGIMIRTFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYEETNTFKGIKLAYVGDG-NNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVWMSMGQEGE-EEKYTLFQPYQINKELVKHAKQ-TYHFLHCLPAH-----------------REEEVTGEIIDGPQSIVFEQAGNRLHAQKALLVSLFKN------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -181138 for 2638 contacts (-68.7/contact) +
2D Compatibility (PS) -32799 + (NN) -13959 + (LL) 2224
1D Compatibility (HY) -26000 + (ID) 6750
Total energy: -258422.0 ( -97.96 by residue)
QMean score : 0.651
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