Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLDNKTIEIIKSTVPVLQQHGETITGRFYDRMFQDHPELLNIFNQTNQKKKTQRTALANAVIAAAANIDQLGNIIPVVKQIGHKHRSIGIKPEHYPIVGKYLLIAIKDVLGDAATPDIMQAWEKAYGVIADAFIGIEKDMYEQAEEQAGGWKEYKPFVIAKKERESKEITSFYLKPEDSK----PLPEFQAGQYISIKVRIPDS--EYTHIRQYSLSDMPGKDYYRISVKK--------DGVVSSYLHDGLQEGDSIEISAPAGDFVLDHA----SQKDLVLISAGVGITPMISMLKTSVSKQPERQILFIHAAKNSEYHALRHEVEEAAK-HSAVKTAFVYREPTEEDRAGDLHFHEGQIDQQFLKELIANTDADYYICGSPSFITAMHKLVSELGSAPESIHYELFGPQLSLAQSV
4G1V Chain:A ((2-398))-LAEKTRSIIKATVPVLEQQGTVITRTFYKNMLTEHTELLNIFNRTNQKVGAQPNALATTVLAAAKNIDDLSVLMDHVKQIGHKHRALQIKPEHYPIVGEYLLKAIKEVLGDAATPEIINAWGEAYQAIADIFITVEKKMYEEA-----LWPGWKPFEITAKEYVASDIVEFTVKPKFGSGIELESLPITPGQYITVNTHPIRQENQYDALRHYSLCSASTKNGLRFAVKMEAARENFPAGLVSEYLHKDAKVGDEIKLSAPAGDFAINKELIHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNPNRPIYWIQSSYDEKTQAFKKHVDELLAECANVDKIIVHTDT------------EPLINAAFLKEKS-PAHADVYTCGSLAFMQAMIGHLKELEHRDDMIHYEPFGPKMSTVQ--


General information:
TITO was launched using:
RESULT:

Template: 4G1V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1932 -223161 -115.51 -590.37
target 2D structure prediction score : 0.74
Monomeric hydrophicity matching model chain A : 0.82

3D Compatibility (PKB) : -115.51
2D Compatibility (Sec. Struct. Predict.) : 0.74
1D Compatibility (Hydrophobicity) : 0.82
QMean score : 0.586

(partial model without unconserved sides chains):
PDB file : Tito_4G1V.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4G1V-query.scw
PDB file : Tito_Scwrl_4G1V.pdb: