Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MADSFLFYNL-----------------SEAQMTFQDVMERLKA---FVQKDPRSSY---VLSI-GTDSQVYRDYTKFITALH----LHRTGKGAWGCLKNHTVDRPIHSLRE------KISLETAYSQETAAHILD-------GHLM-----------------DITDLLLPFTGEGADLTFEVH---LDIG---KKGLTKDLIQEMTGRITSMGIEAKIKPDSYTA---FSYANRFTK 1VRT Chain:A ((4-244)) ---PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLG-IPHPAGLKK-KKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQK--EPPFLWMGYELH

General information: TITO was launched using: RESULT: Template: 1VRT.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 500 -59571 -119.14 -361.04 target 2D structure prediction score : 0.52 Monomeric hydrophicity matching model chain A : 0.64 3D Compatibility (PKB) : -119.14 2D Compatibility (Sec. Struct. Predict.) : 0.52 1D Compatibility (Hydrophobicity) : 0.64 QMean score : 0.268

(partial model without unconserved sides chains): PDB file : Tito_1VRT.pdb: (Unconserved sides chains are recalculated) : Sequence: align-1VRT-query.scw PDB file : Tito_Scwrl_1VRT.pdb: