Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSAFTLYPAIDMRNGKCVRLVQGDYNKETIYGDSPYDMAELFEKEGAEWIHLVDLDGAKEGKRVNDRHVIEIAQKLNLKVEIGGGIRSENDVYEYLSAGVERVILGSSAVSNPPFVKKMLKQYGEKIAIGLDARNGFVSTEGWLETSTLKATELGKELANEGAEVFIFTDIATDGMLSGPNVKSTVELAKETGKSVIASGGVSSVADLEALA---RNEADGVSGAIIGKALYTNQFTLSEALERVKRK
4U28 Chain:A ((6-244))-SRLELLPAVDVRDGQAVRLVHGESGTETS-YGSPLEAALSWQRAGAEWLHLVDLDAAFGT-GDNRELVRQVTEAMDIKVELSGGIRDDASLAAALATGCTRVNLGTAALESPEWVAKVIAEHGDRIAVGLDVRGTTLKG-------GGDLYEALERLDKEGCARYVVTDIAKDGTLQGPNLELLRNVCAATDRPVVASGGVSSLDDLRAIAELVP---LGVEGSIVGKALYAKAFTLEEALEAVA--


General information:
TITO was launched using:
RESULT:

Template: 4U28.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1330 -94821 -71.29 -412.27
target 2D structure prediction score : 0.76
Monomeric hydrophicity matching model chain A : 0.82

3D Compatibility (PKB) : -71.29
2D Compatibility (Sec. Struct. Predict.) : 0.76
1D Compatibility (Hydrophobicity) : 0.82
QMean score : 0.667

(partial model without unconserved sides chains):
PDB file : Tito_4U28.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4U28-query.scw
PDB file : Tito_Scwrl_4U28.pdb: