Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPT-GTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITIS
2POY Chain:A ((30-181))
-------------------QTPAGRITMELFADKVPITAENFRALCTGEKG---MGQSGKPL--CYTGSFFHRIIPQFMIQGGDFTRGDGTGGESIYG-KFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVL--EGMEVVKSIEKCGSQ-NGKPTKSVCI------
General information:
TITO was launched using:
RESULT:
Template:
2POY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50937 for 1120 contacts (-45.5/contact) +
2D Compatibility (PS) -15858 + (NN) -13247 + (LL) 1596
1D Compatibility (HY) -12400 + (ID) 3650
Total energy: -94496.0 ( -84.37 by residue)
QMean score : 0.684
(partial model without unconserved sides chains):
PDB file :
Tito_2POY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2POY-query.scw
PDB file :
Tito_Scwrl_2POY.pdb
: