Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTPQARPARRADVRELSRTMARAFYDDPVMSWLLSNDNARTARLTRLFATIVRHQHLAGGGVEVARGAAGIGGAALWDPPDRWRESRRQQLAMTPGFLRVFGFRTAKARAALDVMMRVHPEEPHWYLAAIGSDPTVRGQGFGQVLMRSRLDRCD---AEHCPAYLESTKPENVPYYQRFGFRVTREIALPDAGPPLWAMWREPR
1U6M Chain:A ((2-189))
--SLIRSATKEDGQAIARLVLVILKDMELPILEEVSEEQMIDLLAEATAY--PTYRYGYQRILVYEHAGEVAGIAVGYP---AEDEKIIDEPLREVFKKHGLAEDVRLFIEE------ETLPNEWYLDTISVDERFRGMGIGSKLLDALPEVAKASGKQALGLNVDFDNPGARKLYASKGFKDVTTMTIS--GHLYNHMQKEV-
General information:
TITO was launched using:
RESULT:
Template:
1U6M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57919 for 1423 contacts (-40.7/contact) +
2D Compatibility (PS) -19422 + (NN) -6487 + (LL) 1532
1D Compatibility (HY) -2400 + (ID) 1500
Total energy: -86196.0 ( -60.57 by residue)
QMean score : 0.286
(partial model without unconserved sides chains):
PDB file :
Tito_1U6M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1U6M-query.scw
PDB file :
Tito_Scwrl_1U6M.pdb
: