Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAFPRTLAILAAAAALVVACSHGGTPTGSSTTSGASPATPVAVPVPRSCAEPAGIPALLSPRDKLAQLLVVGVRDA-ADAQAVVTNYHVGGILIGSDTDLTIFDGALAEIVAGGGPLPLAVSVDEEGGRVSRLRSLIGGTGPSARELAQTRTVQQVRDLARDRGRQMRKLGITIDFAPVVDVTDAPDDTVIGDRSFGSDPATVTAYAGAYAQGLRDAGVLPVLKHFPGHGRGSGDSHNGGVTTP-PLDDLVGDDLVPYRTLVTQ-APVGVMVGHLQVPGLTGSEPASLSKAA-VNLLRTGTGYGAPPFDGPVFSDDLSGMAAISDRFGVSEAVLRTLQAGADIALWVTTKEVPAVLDRLEQALRAGELPMSAVDRSVVRVATMKGPNPGCGR |
| 3WO8 Chain:A ((4-318)) | ---------------------------------------------------------------DLGKLFFCGFNDFNEEVKEIIRKYRPTGILIYPGVLSK-EYLLMDFMSFLSKEGDFLISSDHEGGQLEVLKY-VP-SSPGNLAFGK-NSPDVTYRYSRVAGKIMEIVGLNMVFAPVLDLLS-------DIRSYGSDPKIVAEHGARACEGYLEGGVIPCIKHFPGHGKARE----TLPVVDAPFEKLWEEDLLPFRKVLEREKKVTVMTAHVRYSSID-SLPATLSEKIITDVLREKIG-----FDGLVISDAME-MSAVSNNFSVEEIVSLFLNAGGNMILLGDYRNLPVYYETLVKLLEDGKVQKDKVERSIRTVEKYLAFAKK--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3WO8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -148350 for 2691 contacts (-55.1/contact) +
2D Compatibility (PS) -32743 + (NN) -20087 + (LL) 2928
1D Compatibility (HY) -24000 + (ID) 4300
Total energy: -226552.0 ( -84.19 by residue)
QMean score : 0.522
|
|
|