Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDQRWLIDKSALVRLTDSPDMEIWSNRIERGLVHITGVTRLEVGFSAECGEIARREFREPPLSAMPVEYLTPRIEDRALEVQTLLADRGHHRGPSIPDLLIAATAELSGLTVLHVDKDFDAIAALTGQKTERLTHRPPSA
1V8P Chain:A ((27-158))
--AVEYLVDASALYALAA------HYDKWIKHREKLAILHLTIYEAGNALWKEARLGRVDWAAASRHLKKVLSSFKVLEDPPLDEVLRVAVERGLTFYDASYAYVAESSGLVLVTQDRELLAKTK-GAIDVETLLVRLAAQ
General information:
TITO was launched using:
RESULT:
Template:
1V8P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43524 for 1023 contacts (-42.5/contact) +
2D Compatibility (PS) -13848 + (NN) -539 + (LL) 708
1D Compatibility (HY) -1600 + (ID) 1100
Total energy: -59903.0 ( -58.56 by residue)
QMean score : 0.280
(partial model without unconserved sides chains):
PDB file :
Tito_1V8P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V8P-query.scw
PDB file :
Tito_Scwrl_1V8P.pdb
: